-
Hi , I used haphic for allotetraploid genome (2n=4x=44). It makes 22 groups like the following which have huge variations in chromosome sizes as given below and can be seen in juicebox plot. Could you…
-
Hi, Thanks for the tool and its proper documentation!
I successfully run the analysis for my paralogs and I got the results attached from wgd ksd, wgd syn. However, I am confused about the peak con…
-
Hi, I am running the provided MAGScoT R script and I am getting the following error at line 3.
Rscript ../github/MAGScoT/MAGScoT.R -i S21.contigs_to_bin_R_change2.tsv --hmm S21.hmm
```
Loading …
-
Hello,
I have been working on submitting a genome to NCBI, and along with many others have internal contamination by adaptors (as identified by FCS-adaptor). As recommended, I am trying to use the …
-
Hi,
I have run the binning module.
MetaBat2 run without problems and output around 200 bins, but both MaxBin2 and Concoct called for errors, see below the error file:
```bash
Creating depth ma…
-
Hi,
I am trying to use HapHiC to anchor a haplotype-collapsed genome (hifiasm p_ctg), and I found that HapHiC perform not so good, **especially contig ordering,**
HiC data was mapping following Hi…
-
Hello,
I am getting constant error while using merge command in ragtag
```
Mon Sep 27 20:53:00 2021 --- INFO: Building the scaffold graph from the AGP files
Traceback (most recent call last):
…
-
Hi,
I have been running JupiterPlot to compare an assembly to a reference genome and ended up with fractions of scaffolds (new assembly) aligning to the reference genome. However, the plot leads to t…
-
Hi! Thanks for developing such a useful tool! :)
I've installed it with Bioconda in a linux server and I'm trying to use it to analyze the STAR BAM files from PE reads, but I got two errors.
When …
-
Hello Jens,
I tried to use gemoma to annotate the genome and
the input format for gff file is the same as the test data so I don't understand why it didn't work out
java -jar GeMoMa-1.9…