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Hi, I have some questions about using RMATS
1. If I only want to test how much AS is contained in a sample (containing 3 biological replicates) instead of differential variable shear, the followin…
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Hi there,
I've been trying for a few weeks now to get STAR-fusion to work on usegalaxy.org.
I've tried two ways: 1. running RNA-STAR first, and then using the output for STAR-fusion, and 2. Lett…
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**Description**
DPL-075 As R&D lead (Scott G) I would like new LCM (low-input) combined DNA- & RNA-seq pipeline which is an expansion of the current LCM DNA pipeline
**Who the primary contacts a…
rl15 updated
3 months ago
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Dear @rsatija @saketkc,
I really appreciate this wonderful tool.
In the normalization step, there are two representative tools in seurat (NormalizeData, and SCTransform).
I saw a lot of issues …
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https://mp.weixin.qq.com/s/zbQbrMDTg0nw9J_inPuL7A
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### Context
The `bhki` community would benefit from the recommended data transfer workflow proposed in #4213 to get started with analysing ~GBs of `.fastq` files for RNA sequencing.
### Proposal
Se…
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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Hello! So I’m trying to use ShortStack for miRNA identification from sorghum roots samples. In order to test the efficiency of our small RNA library protocol we initially sequenced a small pool of 20 …
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I noticed that kazu changed the input text. I'm curious how it made this mistake and how to prevent it.
To recreate: I passed in a text block that contained the text "The CFIm25 deletion leads …