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BTE node and edge attributes that we generate (not ingested from TRAPI APIs) currently have a "value_type_id" field that isn't necessary [(not required)](https://github.com/NCATSTranslator/ReasonerAPI…
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@marcodarko has been updating the query handling code in this branch:
https://github.com/biothings/bte_trapi_query_graph_handler/tree/generalize_query_handling
This code uses a new data structure …
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https://github.com/NCATSTranslator/testing/issues/55 issues a [multi-hop query](https://github.com/NCATSTranslator/testing/blob/main/ars-requests/not-none/sharedPhenotypes.json). In the [BTE results](…
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I tried to install this project on macOS but failed with this error:
```
inotify is not available on macosx-10.9-x86_64
----------------------------------------
ERROR: Command errored out …
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This can be done in two stages:
1. Support creating generic OpenAPI metadata for all API endpoints enabled in a BioThings API instance
2. Support adding OpenAPI extensions (e.g. `x-bte`, `x-tran…
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### To-do:
- figure out what is going on with this error and how to fix/manage it
- get BTE to return error/warning codes + TRAPI-compliant JSON when errors happen
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### The error users see
…
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In a `ColdHotIndexer`, the _hot_ indexer settings like `num_shards` and `num_replicas` are read from a _hot_ build doc (as shown in the `superhot_hg19` config below).
These settings should als…
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Now that the new pending API for idisk is complete (https://github.com/biothings/pending.api/issues/22), creating an issue to track the creation of a smartAPI record and integration into BTE as a data…
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For many historical reasons, BTE currently uses BioThings APIs for node normalization and ID synonymization (performed by [biomedical_id_resolver.js](https://github.com/biothings/biomedical_id_resolve…