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List of Services to deploy:
- [x] Workflows with new song/score update
- [x] Re-index relay
- [x] deploy relay 2.0.1 --> 2.3.0
- [x] deploy workflow management 2.2.1 --> 2.8.0
- [x] deploy r…
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- define what configs to deploy with the workflow graph nodes (ingest) + (align) + (sanger)
- nodes will be using the schema registry for validation of input parameters
- will translate into helm …
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`As you mentioned it, I think MUTO-INTL will better reflect the international nature of our project (cases coming from Africa, Asia, Europe, North and South America)`
For projects from multiple c…
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**Rule #1:** the total Number of `alignment` runs should not be greater than the total number of samples.
- if it is, the biggest possibility is that there is a duplicated `sequencing_alignment` a…
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- Once the song/score module is updated to run nextflow DSL2, all current workflows need to have that module imported and a new version published.
- check with @junjun-zhang if any more wf changes ne…
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Workflow Management and the Song/Score nextflow tools have been updated:
- https://github.com/icgc-argo/workflow-roadmap/issues/30
- https://github.com/icgc-argo/workflow-management/issues/98
Ste…
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Both Edge and Node will use this utility. It already exists in edge at time of writing this.
Source: https://github.com/icgc-argo/workflow-graph-edge/blob/develop/src/main/java/org/icgc_argo/workflo…
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really at 2.1.0, github says 2.0,0
![image.png](https://images.zenhubusercontent.com/5a06111e8a75884b9086f5d8/e3c63a9a-756f-40e5-ab01-d45295bd6de5)
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Details are described in https://github.com/icgc-argo/ega-file-transfer/issues/1
This ticket will address the following:
- [x] get a list of affected `donorId/sampleId/specimenId`
- [x] get a lis…
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- define complete schema
- when we get a complete alert from management, enrich the data into the complete message
- update node to execute a "complete" event in compliance with this schema and is…