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Hi,
I've tried to run my dataset through the program using the Shiny app. I get the output for the 'Individuals' and 'Normalized depth plot' tabs but I get 'Error:missing value where TRUE/FALSE neede…
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Hi,
Thanks for the interesting paper and open-sourced code.
Recently, I ran the EOPSN method on K20 setting folllowing the given guideline (w/o any editing) and I found the results of unknown th…
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thanks for sharing code. i wonder if i can train on my own dataset, and how should i prepare the pkl file?
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## Issue description
- [ ] This issue is a regression.
- [ ] It is unknown if this issue is a regression.
*Describe your issue in detail and steps it took to produce it.*
## Impact
*Descr…
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How to get this file ./clustering/apple_template.ply
cwh01 updated
1 month ago
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@Nowosad, would these same parameters work for tuning `compactness`? And if so, would you be able to provide some guidance on how to choose the range of values to test? Adjusting the formula from your…
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What is the difference between scDeepCluster.py,scDeepCluster_latent.py and scDeepCluster_estimate_k.py?
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HI @lecy,
I'm trying to clarify clustering conceptually.
In the question:
Compare that set of groups to the groups identified by the model using only the three indices above. Are they identify…
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Hi,
I am wondering whether there is a way for me to run function calculate_stability to get the stability index matrix?
I tried this function in SC3_1.7.6 and SC3_1.3.18, neither worked.
B…