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Based on the work in #265 and #266 generate the glycan and protein schema. These schema files should be used in the automated testing to validate the glycan and protein details.
**Dependencies**:
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# Notes on data
## Storage
* UKB PPP data is fully mirrored in the Gentropy Vault.
* For each study we have one TAR file which contains per-chromosome gzipped tabular files. Because of that, some…
tskir updated
2 months ago
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Hi Vadim,
Thank you for this tool. It really helps with our work. We are trying to generate a predicted library from a fasta file in DIANN v1.8.1. This works great in the Windows GUI build but does…
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Hi, currently for the AIRR fields v_call, d_call, j_call sometimes calls several gene isoforms (e.g. IGKV1-33\*01, IGKV1-33\*02) and these multiple isoforms are currently separated by commas. If you t…
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''We created a web portal allowing users to query, visualize and download missense VEPs for all human protein isoforms (accessible at https://huggingface.co/spaces/ntranoslab/esm_variants).''
I can…
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I accidentally made a `map_iso_gene` file where some isoforms were not present and got this somewhat cryptic error message:
```
Error in aggregate.data.frame(t(results_MCMC$Y), by = list(results_M…
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### Label
RAB18 Deficiency
### Synonyms
Warburg Micro Spectrum
### Synonym type
None
### Definition
Per GeneReviews (https://www.ncbi.nlm.nih.gov/books/NBK475670/): “RAB18 defi…
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Originally reported by: **Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece))**
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Originally from an email to…
reece updated
6 months ago
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#### Current behavior:
Hi everyone,
after the fix #557/discussion in #527, the Human-GEM v1.16 cannot produce free C4-C11 fatty acids (the ATP-generating reaction was the only route to get free FAs…
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Hi !
My command is "java -jar GeMoMa-1.9.jar CLI GeMoMaPipeline threads=3 s=pre-extracted GeMoMa.Score=ReAlign AnnotationFinalizer.r=NO o=true t=Gallus_gallus.fa c=CRY4.fa tblastn=true"
But if I…