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@jbloom I would like to add code to the pipeline such that we will be able to process files that contain indexes added during Round1.
There are a couple of ways I can do this, let me know what you…
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This would map closely to Docker's native volumes support, and allow people to build and version pre-baked data as containers. Maybe read-only? Haven't thought that far...
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I've been trying to use fastx_collapser to collapse a CDS fasta file to unique sequences only (so I can build a kallisto index with it). However, I've been getting the persitent error:
"fastx_colla…
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Hi,
It seems that several people are interested in getting stm32h7 to work better, specifically spi, and i2c.
Several issues and pull requests have been opened for this purpose:
https://github.…
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I have [a long comment](https://users.rust-lang.org/t/rust-as-a-high-level-language/4644/72) at the Rust forum (some of the inspiration came from @keean linking me to Sean Parent's [video](https://you…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Community Note
* Please vote on this issue by adding a :thumbsup: [reaction](https://blog.github.com/2016-…
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I am using full disk encryption and an encrypted swap partition. On every shutdown I get the following Error:
```
Okt 20 09:03:52 kronos systemd[1]: Deactivated swap /dev/dm-1.
Okt 20 09:03:52 kronos…
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I did ITS sequencing of stool samples for Fungi. However when I look at relative abundances, even for phylum 60-70% of my relative abundance graph is Other DNA.
When I look at how my ASVs map with…
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### Describe the workflow you want to enable
Scikit-learn defines three popular metrics for evaluating clustering performance when there are no ground-truth cluster labels: [sklearn.metrics.silhouett…
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Hello,
EAGLE-RC seems like a very useful tool for Allele specific expression.
I saw the option `--dp`. So with this is can run EAGLE-RC on aligned long-read RNA-seq (e.g IsoSeq)?
Or do you ha…