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I have encountered the following pattern a number of times now:
1. I segment objects and calculate regionprops and export them to a table. `regionprops_table`) already facilitates this workflow. Th…
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From the very comments on "cockpit/experiment/zStackMulti.py":
```
## Just like a standard Z-stack experiment, but we do multiple exposure times
# at each Z slice. Hacked all to hell though since…
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Hi it's a really nice and interesting repo. Could you provide a documentation on how to use VFSMS . That would be really appreciated as I need to experiment with VFSMS on the images for my project.
…
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Hi jbms,
I wanted to learn more about how to use segmentation and annotation features of Neuroglancer. For example, drawing boundaries on an image and save it for later use. Or what do double cli…
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I am currently looking into `pycro-manager` and was wondering whether it is possible to automate image acquisition while showing the images using micro-manager's own preview windows (MM is already ope…
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Hi,
I'd like to first thank everyone who has helped creating this wonderful tool. This summer, I'm working with a lab that is trying to reduce noise in their fluorescent microscopy images (using MacO…
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Hey,
Just wanted to bring to attention from a demo run that I did after calling the normalize function in the prediction notebook.
The objects in the image seem to compressed. Here's a snapshot sh…
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Hi,
Does the library support OME-TIFF format? How do I read OME-TIFF comment? Is the following the right code to use?
```
string comment = "";
using (Tiff tif = Tiff.Open…
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Converting large dataset fom Luxendo raw data to TIFF , I`ve noticed that the memory keeps being utilized/increasing and at the end I was at 85% (of 128 GB or RAM!!); if there was a way to " clear" t…
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Is it possible to use VoxelMorph with 3d datasets obtained from 2d photon imaging of tissues at different focal lengths (3rd dim) to correct motion artifacts from breathing and head motion?Is there a …