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Hello,
I've been using OpenMM to run simulations of the AMOEBA14 water model in a capacitor-type set up and would like to calculate a dipole moment profile across the simulation box.
There are t…
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Part of charge development for carbohydrate molecular dynamics simulations requires an ensemble charge set. This charge set is built from PDB files which were extracted at regular intervals from a pr…
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Dear Editors,
I am Xiyuan Wang, the first author of [wang22d](https://github.com/mlresearch/v198/tree/gh-pages/wang22d), "Graph Neural Network with Local Frame for Molecular Potential Energy Su…
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Greetings,
I'm Marco Ravalli, a phD student working on molecular dynamics by classical interatomic potentials. I'm currently trying to use one of the pretrained MACE models to work with my systems, …
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It is currently not possible to visualize the constraints. So i guess this is step one. What i suggest is to make meshing of the constraints possible, as opposed to the particle itself.
The benefi…
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I seems the paragraph style `bibliography` is not recognized by pandoc.
I have converted this simple test file to docx:
```
---
references:
- type: article-journal
id: WatsonCrick1953
a…
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As we know, SMILES usually expressed as 'CCNOCCN', but in your data ,what does '9|12|45|67' mean, how can we tran the SMILES to this
…
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If molecular orbital populations are calculated, dynamics fails with a diagonalization error:
Failure in diagonalisation routine ZHEEVR, unable to complete Cholesky factorization
Conditions when t…
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defect description:- some of the photos are not clearly visible
steps to reproduce:-Molecular Interactions Lab->List of experiments->Experiment 8- Many-body forces in a polyatomic molecule->theory…
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**Description**
Thought the pages are responsive, the images aren't.
**Expected Behaviour**
The images shrink/unshrink to fit into the page of any size.
**Actual Behaviour**
The images presen…