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Could you give a more extensive overview of the current state of the field?
You mention that your database is the first database of disulfide bonds to your knowledge.
I found a part of biotite packa…
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Currently PaStA only analyzes patches (thus of course the name). As Patchwork will support both, patches and cover letters to be in a relation, the question arises whether we shall support analyzing c…
metp updated
2 months ago
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* phold version: 0.1.4
* Python version: 3.11.9
* Operating System: Ubuntu 20.04.6 LTS
### Description
I'm trying to generate annotation for a couple of phages from the BASEL collection (like t…
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Please, describe below the problem you think we face in the miRNA/isomiR naming.
Try to summarize it in 200 words. The current discussions are here:
* isomirs : https://github.com/miRTop/incubat…
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Hi,
I wanted to make sure that I understand the definition of the bias potential matrix correctly.
Assuming an umbrella sampling experiment with 4 windows A, B, C, D and 3 states 0, 1, 2. The restr…
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Should the pdbqt file only be created by AutoDock Tools? Is there any important difference between the pdbqt files derived from AutoDock Tools and OpenBabel? If there is some important reasons, I may …
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We should remove the reference genome field and replace it with an entry from the [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7408187/) resource.
The relevant information to store …
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https://www.glygen.org/protein/P05787-1
The site for O-glycans, Phosphorylation and mutation between sequence viewer and the corresponding ProtVista view do not match. ProtVista has more of all of …
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Following the similar efforts to rationalise the alpha-ketoglutarate dehydrogenase complexes and TCA cycle complexes (see #26122 and #26882), I propose we do something similar for respiratory chain co…
sjm41 updated
1 month ago
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Hi,
pyScoMotif is really a great tool for structural motif or pocket search! Actually, I've tried to find such a tool for a long time. Several tools have been found and compared, like COLLAPSE (h…