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Hi VSN team :)!
I have noticed that when running SCENIC in the pipeline, the GRNBoost modules adjency table only contains the columns TF-target-importance. For some analyses afterwards, it is inter…
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Hi Tim,
For the purposes of constructing a trajectory in Signac is it okay to run the mouse_brain_vignette up to the integration with scRNA seq dataset and then run the downstream steps outlined i…
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Hi, I have a question about the `TSSEnrichment` function. I am able to calculate the tss enrichment scores for the example in Signac vignettes: "Human peripheral blood mononuclear cells". However, whe…
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Hello! Thank you for this awesome tool! In particular, I would love to be able to simulate changes in a scRNAseq data set after a single transcription factor of interest is perturbed.
From the tut…
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I am comparing control and treated samples using Signac data integration [vignette](https://satijalab.org/signac/articles/integration.html). However in the tutorial you use "Cell metadata"
and "Coun…
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This is a follow up from issue #2443.
I am working with matched scRNA-seq/scATAC-seq data. I want to regress out the nCountRNA variable only in the scRNA data before FindTransferAnchors() which wil…
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**Attach your log file**
[ArchR-addReproduciblePeakSet-ef5e40415715-Date-2021-01-14_Time-12-24-41.log](https://github.com/GreenleafLab/ArchR/files/5814697/ArchR-addReproduciblePeakSet-ef5e40415715-…
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Good day!
I have a related question to issue #215. When comparing two conditions (e.g., non-treated and treated cells) and after merging (or integration), should I use the RNA assay (using the infe…
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Hi, I got a different number of features and samples when working with the vignette's data.
> pbmc
An object of class Seurat
_**78612 features across 9276 samples**_ within 1 assay
Active assay:…
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https://mp.weixin.qq.com/s/zSWKN8PE5naF6PUAG3LkgQ
ixxmu updated
3 years ago