-
What are the instructions for running _run_Merge and _run_Recal_pass2? Where is the (new?) input/raw data?
-
This idea came from @krchristie
Ontology editors would find it easier if errors and warnings were appropriately color highlighted in GitHub actions
GitHub supports use of ANSI color output on t…
-
# Description
Comparison of `seg_ms_lesion_mp2rage` and `UNIseg`, models for segment MS lesions on MP2RAGE images (`UNIT1` contrast)
- Experiments performed using SCT v6.3
- To test both models, …
-
Hi! Thanks for providing a python-based version of CARLIN pipeline. We want to modify the arguments to run on our own sequencing data and reference from a different experiment protocol. However, I can…
-
As far as I know, Pypiper runs commands of a pipeline sequentially, even if some commands can be run concurrently. Will you plan to support the concurrent execution in the near future?
Cheers,
Zhe…
-
- read temporary files containing quality information
- derive additional quality information
- ~~normalize peak files (flag for BL overlap)~~
- output: analysis metadata file
-
Hi,
Thanks for the great work.
I experience a similar issue as described here #28 and here #34.
```
longQC:2021-10-27 08:06:14,443:598:INFO:Generating coverage related plots...
Traceback (…
-
### Description of the bug
I am using Sarek for Whole exome sequencing, running on slurm. I noticed this pipeline is stuck in one process without outputing any error messages. It hangs in the step [ …
-
I have installed AMR++ on our local computing cluster. I have been trying to get it running on our cluster, and have run into a problem with the multiqc part of the pipeline.
I currently am runnin…
-
In the PBCCSWholeGenomeSingleFlowcell workflow, in CallSVs, Sniffles task I got an error where it sounds like there's too few reads in the bam to estimate some parameter it needs? Log file excerpt fol…