-
_TL;DR I've created a toy dataset to help model publishing of DNA with hierachical events. I wasn't sure of the best place to communicate this, so I chose this repo. Happy to share it through any oth…
-
Hi brendaf
I have a dataset of ~140,000 ASVs that I want to tun through optimotu. The ASVs have been assigned taxonomy. Do you have any examples or recommendations for preparing the ASVs before run…
-
Hello,
I would like to factorize benchmark methods in a base class which is in a protected module, but asv executes it.
Would it be possible to prevent asv from doing that?
-
Hello,
I'm currently trying to cluster fungal ASVs into OTUs using DECIPHER and speedyseq, using the code example you have online:
```
cluster_matrix
-
Reproducer:
With `"environment_type": "mamba",` in asv.conf.json
```shell
$ conda create -n asv python=3.12 asv libmambapy conda-build
$ conda run -n asv asv HEAD^!
[…]
· Creating environmen…
-
https://github.com/man-group/ArcticDB/actions/runs/9300495907/job/25596708636
https://github.com/man-group/ArcticDB/actions/runs/9288017741/job/25558505873?pr=1584
```
Traceback (m…
-
**Is your feature request related to a use case or problem? Please describe.**
[PR3822](https://github.com/quantumlib/Cirq/pull/3822) adds performance benchmarks for ASV to solve #1124 . Create a s…
-
-
Here is some code from `asv` which used `MambaSolver` (vendored from `mamba.api`), with representative values for some of the variables:
```python
solver = MambaSolver(['conda-forge', 'nodefaults'…
-
Hi,
Thanks for the package. I am currently trying to run the multiamplicon but I am stuck at the dataMulti command with my dataset. It says (sorry for the french terminal) :
```
Erreur dans if (nr…