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In your article, you mention:
'For testing on independent data, we removed from the IMG test dataset any sequence that had 90% identity along 90% of length coverage with any sequence in the training …
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**Describe the bug**
The findall regex either changed in newer versions of Python or this has always been incorrect:
https://github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/blob/f3b93dd3972b137…
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Hi Max,
I'm getting an error I can't pinpoint, when running the `process_experiments.py` script.
I have modified my config file according to my needs, I can see the count files and i can start c…
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I'm trying to run HiC-Pro on a test data of my own, but After setting all the parameters i get the strange error, that my files are not found. But somehow it searches for the wrong files.
This is …
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Bash (Bourne Again SHell) is a powerful command-line interpreter and scripting language that is widely used in bioinformatics for automating tasks and processing biological data. Here are some common …
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This chapter is getting quite long, especially if we add package manager info - @oneilsh, how would you feel about splitting it into 2?
I'm thinking a split right after the first section of exercis…
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### Lesson Title
Snakemake for Bioinformatics
### Lesson Repository URL
https://github.com/carpentries-incubator/snakemake-novice-bioinformatics
### Lesson Website URL
https://carpentries-incubat…
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em có thử chạy pgap cho anotation, kết quả bị lỗi và không tìm được lý do
Đầu tiên em cài đặt docker, và kiểm tra sau khi cài đặt bằng command:
docker run hello-world
Kết quả:
Hell…
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Thanks for contributing these phyloseq tools.
I'm wondering if we could integrate these tools into the IUC repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/phyloseq/?
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Let's review the `library/ngs-essentials` toolset and extend it with more commonly used bioinformatics application
**Action items**
1. Review tools/versions that shall be added and list them here
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