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When trying to build BioPerl, the build process fails with:
```
== permissions...
== ... (took < 1 sec)
== packaging...
== ... (took < 1 sec)
== FAILED: Installation ended unsuccessfully (buil…
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* link to support ticket: [#2024100160003061](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=170893)
* website: https://github.com/tseemann/abricate
* installation docs: htt…
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Re: the Bioperl issue, if you can provide a test case or file a bug regarding the errors you have we can try to address them. Thanks!
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Hi Jared
Thanks very much for this, looks great. Struggled to compile it with our default HPC setup, seems to need Bioperl so when I added this into the module loading it worked fine - just thought…
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## Describe the issue
I encountered the same problem as shown in the figure when using the DownStream plugin (there is no such problem when using --hgvs). Following these three instructions, I update…
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The check for the Bioperl revcom issue is very useful but the logging is far too verbose. When I run AliTV I get one of these messages (depending on the machine):
```
INFO - MAF input file detected,…
iimog updated
3 years ago
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When testing the Taxonomy.pm module using Taxonomy.t, recently been getting alot of errors like below (stemming from gi2taxid and taxid2lineage methods). I thought the Bioperl module has a built in de…
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This may be a result of Bio::ASN1:EntrezGene having to be re-released since the change to Dist::Zilla (@cjfields ?), but right now it pulls in BioPerl v1.7.2 from CPAN when installing BioPerl v1.7.3 f…
hlapp updated
6 years ago
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Hello
FYI I noticed that prokka biperl deection is no correct
you expect `minbpver = "1.006002"`
my bioperl versin claims to be `1.7.8`
so `err("Please install BioPerl $minbpver or higher"…
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Author Name: **Albert Vilella** (Albert Vilella)
Original Redmine Issue: 1891, https://redmine.open-bio.org/issues/1891
Original Date: 2005-11-03
Original Assignee: Bioperl Guts
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http://evol…