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Migrated from https://redmine.open-bio.org/issues/3398
@yong27 said:
> I just tested Oracle BioSQL for Biopython using cx_Oracle. It includes some Biopython modification due to my genbank file test.…
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Just tried to remove subdatabase but giving error.
```
from BioSQL import BioSeqDatabase
from Bio import Entrez
from Bio import SeqIO
server = BioSeqDatabase.open_database(
driver="…
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Migrated from RedMine https://redmine.open-bio.org/issues/2526 which I filed on 2008-06-20
As per the title, a SeqFeature's .id property is not preserved after a save/retrieve in BioSQL.
I found…
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Link:
https://biopython.org/DIST/docs/biosql/python_biosql_basic.html
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Open for discussion:
As the data retriever grows to support various formats of datasets. We could provide support for Sequence data.
From a quick search, I have come across some resources that we …
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Author Name: **Dmitry Samborskiy** (Dmitry Samborskiy)
Original Redmine Issue: 2280, https://redmine.open-bio.org/issues/2280
Original Date: 2007-04-27
Original Assignee: Bioperl Guts
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Hi Al…
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Author Name: **Dmitry Samborskiy** (Dmitry Samborskiy)
Original Redmine Issue: 2280, https://redmine.open-bio.org/issues/2280
Original Date: 2007-04-27
Original Assignee: Bioperl Guts
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Hi Al…
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Sometimes MediaWiki pages have slashes in the names, which become child folders after migration.
See https://github.com/OBF/OBF.github.io/issues/1 where we have `/wiki/BOSC_2015.md` but also the fold…
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The page http://biosql.org/wiki/BioJava_BioSQL_ORM is pretty heavily outdated.
hlapp updated
7 years ago
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Is there a way to connect to a BioSQL database through an SQLAlchemy connection?
I'd like to test loading sequences to a Snowflake database to which I connect using [SQLAlchemy](https://docs.snowfl…