-
Dear Author,
I hope this message finds you well. I have been working with the BayesPrism package for bulk RNA-seq deconvolution, and I have a few questions that I was hoping you might clarify.
O…
-
Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
-
Hi all,
I am really interesting in using your R package to deconvulte some of my bulk RNA-seq data. I was just trying to use the example data which is loaded with the package but I have already encou…
-
Hello,
First I would like to thank you for developping BayesPrism v2.2. It allows me to use large atlases as reference for deconvolution.
However, when I tried to use it, I got an error for some…
-
Dear @czarnewski
Thanks for your beautiful paper and code!
I want to use scRNA-seq data with cell type annotation to deconvolution my bulk RNA-seq.
But I only find scRNA-seq raw data and cod…
-
Hi
I am using raw count data from single cell RNA-seq and bulk RNA-seq.
I am currently stuck at running the deconvolution function solveDampenedWLS().
I get the error :
```
Error in solve…
-
Hi,
I would like to learn to run BayesPrism on some bulk RNA seq data as part of a research project. However, whenever I try to open the tutorial_deconvolution.html and tutorial_embedding_learning…
-
Can I used BayesPrism to perform deconvolution on the microarray results (e.g., RMA expression values) by the scRNAseq reference? Suppose I take the relative expressions of RMA values and scRNAseq cou…
-
Hi,
As I was reading for ramwas I saw that you mentioned we could apply ramwas for other data.
I am interested in using ramwas for cell deconvolution of Bulk RNA-Seq data, but I could not figure ou…
-
Hi,
After reading the tutorials carefully, I still feel confused how to prepare the input data. In most cases, users want to get cell-type fractions from tumor bulk RNA-seq data using the 10X data…