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Hello team,
We recently processed some T-cells samples with the Takara SMART-Seq Human TCR (with UMIs).
We used the command "run-trust4 --barcodeLevel molecule -f $Genome/hg38_bcrtcr.fa --ref $…
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Dear everyone,
Log in to the front-end page, an error is reported, the circled place in my picture shows the value as none, what is the reason for this?
When an alt-cell results in a correct answer, the score appears to be multiplied. If more tha…
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STARsolo has a possible issue with counting junction reads for each cell barcode (https://github.com/alexdobin/STAR/issues/2096). Try regtools with -b option after UMI deduplication by UMI-tools.
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Hi everyone,
I'm experiencing an issue while trying to clone the Openpdk repository on my Ubuntu machine. Here are the details:
Operating System: Ubuntu (virtual machine on Windows using Oracle VM…
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Alevin is a new mode in Salmon that handles single-cell (https://github.com/COMBINE-lab/salmon) (https://github.com/COMBINE-lab/salmon/blob/1695160fe8b7585b49fd7e2a458a7f867b311ebb/doc/source/alevin.r…
roryk updated
6 years ago
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``` clojure
(pdf
[{:title "Labels"
:left-margin 2
:right-margin 2
:top-margin 0
:bottom-margin 0
:size [43 58]
:font {:size 3}
:footer {:page-numbers false}}
[:table {…
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## Description
Borg power cells are weird
A: they appear worse then they used to?
B: Borg starting cell (while being medium power cell) is about 20 times better then medium power cell, until downed…
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The SuPerSim package deals with a fixed set of columns for the variables (topography (3), maxswe, scf, soil, forcing) but the counting of valid, permafrost, and glaciated simulations compared to the t…
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Concurrent accesses from multiple threads to the same `cell` object do not scale well in the free-threaded build. There are two problems:
1) `LOAD_DEREF` calls `PyCell_GetRef`, which acquires the p…