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**Question:**
Does GXF currently support the full DLMS/COSEM protocol, or is it limited to only IEC 62056-21, as indicated by the use of the OpenMUC jDLMS library? Specifically, what features of DLMS…
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My recollection is that the "Copy Fiji Link" buttons used to point to the root of the n5 (or soon, zarr) containers, and that seems not to be the case anymore.
For example, the button on this page
…
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(edit: I'm using python 3.10.8 and both dask and distributed are version 2022.3.1)
I have several issues running this code:
Downsampling + rechunking
```python
import dask.array as da
impo…
d-v-b updated
7 months ago
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When running the pom-scijava melting pot, the n5-ij component sometimes fails tests with the exception:
```
java.lang.AssertionError: /cosem_ms
at org.junit.Assert.fail(Assert.java:89)
at org.…
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Pycharm, python 3.12, getting an error with WrapperHeader class.
Traceback (most recent call last):
header = WrapperHeader(
^^^^^^^^^^^^^
NameError: name 'WrapperHeader' is no…
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Using N5 Viewer's "Extract to ImageJ" after loading an 8-bit dataset leads to a 32-bit virtual stack.
Example dataset with uint8 data: `s3://janelia-cosem-datasets/jrc_mus-liver/jrc_mus-liver.n5`
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### Description
While instantiating the `Simulation` in `examples/notebooks/cosem.ipynb` I encountered the following pydantic Validation Error:
```
ValidationError: 2 validation errors for CosemL…
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The lack of structured meta-data in HDF5 made it necessary to store more complex stuff in the external BDV XML file. Also, it naturally limited the richness of meta-data concerned with multi-scale im…
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- move acquisition details down below 'views'
- split top card into a "sample summary" card, and an "access data" card
- put stored dataset size (in TB), decompressed dataset size (in TB) number of …
d-v-b updated
2 years ago
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Currently the code reads a "FileLength" attribute from the header, but this is currently unused.
https://github.com/janelia-cosem/fibsem-tools/blob/f4bedbfc4ff81ec1b83282908ba6702baf98c734/src/fib…