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Hi,
I am trying to run this script and am successful to the point of "Generating spike normalized bedgraphs". At this point it doesn't seem to like my chrom_sizes file and it would be great if you…
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### Description of the bug
Hello,
I am having trouble with the sample input file. I have .csv file with correct file names and format as described in the pipeline page (also attached here). I get …
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### Description of the bug
I have tried rerunning the updated `cutandrun` workflow (v2) using the following sample sheet, based on prior recommendations for skipping IgG controls (set the control to …
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Dear ROSE developers,
I ran ROSE 1.3.1 on my data recently. The command is :
`ROSE_main.py -g HG38 -i SRR17567976_rmchrM_sorted_rmdup_peaks_bl_vtss.gff -r SRR17567976_rmchrM_sorted_rmdup.ba…
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### Description of the bug
Preseq steps fail silently when `scratch` is set to a temporary space (the step appears to be optionally run, so doesn't disrupt the workflow). This appears to be because …
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Hi,
I'm having issues with the MEME analysis for de novo motif finding.
Could you help me with what the issue is?
Thanks for the amazing tool!
[slurm-97220.out.txt](https://github.com/fl-yu/CUT-…
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### Description of the bug
Hi,
First of all, many thanks for this great pipeline.
I am trying to repeat an analysis that I've perfomed using the default seacr peakcaller but with macs2 instead.
…
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### Description of the bug
Hi !
I would like to use your pipeline to analyse some cutnrun data.
However, I encounter a bug, which is the following :
```
Error executing process > 'NFCORE_C…
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Obviously need data to test on. Getting both sharp (TF) and broad data (histone marks) and the various assays.
And preferably finding a region with decent peaks across these marks/assays (GAPDH, MY…