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Hi,
I have prepared a small test network (attached) that has been trained in DeepMIB and exported in onnx and tensorflow/keras formats.
The network is a simple Unet with two down-sampling steps:
![…
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- [x] [Annotation tools](https://computational-cell-analytics.github.io/micro-sam/micro_sam.html#installation): Add links to videos.
- [x] [Installer](https://computational-cell-analytics.github.io/…
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The current [tileImport script](https://github.com/andreped/NoCodeSeg/blob/main/source/importTiles.groovy) does not support multiclass tiles, that is produced prediction tiles generated from MIB by a …
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@Ajaxels I am using the deep learning segmentation tool on MIB Windows 2.82. I am running a Win 10 machine, with 2 RTX A6000 GPUs.
When I try to train a 2D U-Net or DeepLabV3Resnet18, I get severa…
ajr82 updated
2 years ago
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Hello, I am trying to train my RGB images (512x512) for segmentation with the corresponding binary masks (grayscale) using U-Net (2D) colab. But I ran into this error:
![Screenshot_error](https://u…
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Just run the nuclei segmentation pipeline which follows with FP on a local WSI, and observed that the rendered segmentations were off.
This was observed for a WSI stored in the generic TIFF format,…
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I have briefly tested the new FastPathology version. More stable. but some issues:
1. crashes when I try to load small tiff files, but not large ones. When I test prediction for mitoses they become…
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As our TileImporter script does not support multi-class, the alternative method is to run predictions on WSI level.
This requires you to do something slightly different when running predictions fro…
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Hi @andreped
Thanks for this great software and workflow.
I would like to generate a model which classifies the epithelia in the colon from WSIs into villi (usually at the boundary) and crypts (c…