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(deid) julianricci@Julians-MacBook-Pro-673 bert-deid-master % bert_deid download
06/20/2023 15:31:34 - INFO - bert_deid.download - Beginning download of model files to bert_deid_model
06/20/2023…
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# Situationsbeschreibung
Wir nutzen den Recommender in Verbindung mit Inception und der AHD. Wie in der Dokumentation beschrieben, wird empfohlen, den Recommender erst nach dem Start der AHD zu start…
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Hi Everyone,
I am brand new to DEID and very inexperienced with Python. I do have three decades of experience with DICOM though and have used commercial products to do deidentification in the past…
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Hi! Thanks for open-sourcing the code and your models! It's very useful!
I want to automatically replace the found dates (in the notes) with shifted dates (e.g. by 1 day). I tried to add a custom `…
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Tried downloading the model today and ran into the following error:
```bash
❯ bert_deid --model_dir ./bert_deid_model download
08/29/2022 15:16:50 - INFO - bert_deid.download - Beginning …
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Running
```
~/proj/nuisance/data/dbic-deid$ singularity run --cleanenv envs/bidsonym_latest.sif sourcedata participant --participant_label=sid000003 --deid mri_deface
```
lead to the crash (sorry…
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This may be working as designed, and I should have noticed it earlier.
When I use data enrichment such as Terminology services along with requesting DEID, I notice that the submitted bundle is DEID…
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### Expected behavior
Cohort pathway execution succeed.
### Actual behavior
Cohort Pathway execution fail
### Steps to reproduce behavior
1. Create Cohort pathway design.
2. Execute
…
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```
from bert_deid.model import Transformer
# load in a trained model
model_path = 'bert_deid_model'
deid_model = Transformer(model_path)
with open('tests/example_note.txt', 'r') as fp:
…
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Hi I followed the instructions to create a conda environment using the environment.yml file, activated the environment and then ran
```
python3 -m pip install bert-deid
```
but I get
```
…