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Hello, I used DIA-NN's library free and deep learning mode to identify Astral DDA data and have the following questions about the results:
1. Some PSMs do not have corresponding peaks of the identifi…
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@yafeng Thank you for a great tool. I just wanted to check in on the status of the vignette you mentioned in a previous thread using your differential expression method on an output from DIANN? I am j…
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### Description of feature
Apologies if I'm directing my query to the wrong place, but I was wondering whether there is any plan to allow the newest version of DIA-NN (1.9.2) in the DIA pipeline as I…
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PXD026600 was selected as benchmark datasets (narrow window and wide window). We compared peptides and proteins identified at q-value 0.01. The peptide number has increased a little. The number of pro…
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@lievenclement @lgatto @ococrook Thank you for a great tool! I am looking to fit a hurdle model on data I have run through DIANN. In order to do this, should I be utilizing the protein intensity value…
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Dear DIA-NN Team,
Once again, a tremendous amount of work has gone into building and improving DIA-NN.
We recently started using a new Windows machine for DIA-NN processing, relatively powerful with…
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Hi,
Thanks for the nice tool. It would be great if py_diaid could use DIA-NN output as well.
Thanks
Maithy
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When I used the 1.19.1 version, there is a contaminant option, when I choose it, the contaminants were not added to the search. Altrhough I saw you have a database for it.
There is another more "ser…
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Hello, nice tool, thank you for publishing it.
It would be nice to be able to input DIA-NN's report.tsv, as I am not 100% sure on how to convert that to the generic csv.
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Dear Vadim,
First, thanks for making a great software! We are generating DIA phosphoproteomics data using a Bruker timsTOF HT on human cells infected with viruses. We have generated an in-silico sp…