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Example:
```
…
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This paper looks really nice: https://doi.org/10.1093/nar/gkad1225
Has ChIP-seq, ATAC-seq, RNA-seq, enough replicates, two groups (for differential binding).
SRA: https://www.ncbi.nlm.nih.gov/b…
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Test created: **Test_obs1_2**
baseProfile:
```
…
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Should the snapshot generator change the cardinality of a slice intro?
Example:
```
…
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Hi taoliu,
I have two H3K27Ac chip-seq biological duplicates for treated and untreated groups, but no input at all.
There are two different methods mentioned in wiki, [Run MACS2 combining replicat…
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Hi there,
Macs2 is a great software and I used macs2 bdgdiff to call differential binding events of RNA polymerase ii following this link: https://github.com/taoliu/MACS/wiki/Call-differential-bindin…
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I had one treated sample and one non-treated sample, but without Chip-Seq mock (or background control). But I want to identify regions that are differentially histone modification between control and …
meihl updated
5 years ago
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from
https://github.com/pombase/canto/issues/2482#issuecomment-878120963
Note to self:
We also need to consider if this will work for
protein A directly inhibits [protein B protein-binding prot…
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In this issue we'll list the mathematical features that should be considered as to be implemented/aggregated into the library. They come from the lab (Michael, Daniel, Philippe). The list is not bindi…
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Hi Taoliu,
I am comparing two transcription factor's peaks. I analyzed unique peaks, meaning peaks that had no overlap (0 overlapping bases) between the two TFs. I was also interested in differenti…