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https://marineomics.github.io/DGE_comparison_v2.html
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Collaborators have asked if we could implement a module for performing differential analysis.
After speaking with Dan T., we believe that we can do so in the existing application without bogging t…
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I’m facing an issue with the report below.
we have a total of six samples divided into two groups: treated and control. Each sample has been processed independently up to the DE Analysis step, w…
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### Is your feature request related to a problem?
Is there a way to do differential expression of transcripts (e.g. similar to DEseq2 but for transcripts) with RNAlysis?
### Describe the solution yo…
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Hi!
First of all, thank you for developing such a useful tool for analyzing Perturb-seq data! I have a question regarding the differential expression analysis in Mixscale. From reviewing the source c…
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# Grading Assessment for Yixuan Huang
## R Script Components
### 1. Data Loading and DESeq2 Object (1 point)
Score: 1/1
### 2. VST and PCA Implementation (1 point)
Score: 1/1
### 3. PCA …
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# Grading Assessment for Daniel Mendoza-Sanchez
## R Script Components
### 1. Data Loading and DESeq2 Object (1 point)
Score: 1/1
### 2. VST and PCA Implementation (1 point)
Score: 1/1
#…
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v1.2.1
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No resp…
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I know there has been a thread about this in the past: https://github.com/trinityrnaseq/trinityrnaseq/issues/1231
but there seems to me to be an issue that isn't clearly resolved or explained.
We …
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Data set reminder section:
- Do you want the slides to now link to your supplementary materials page?
All sections, in the R code, some parts use `=` and others `