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Using 5ttgen to generate 5TT image from FS segmentation in
https://github.com/sotnir/NENAH-BIDS/blob/1a876927a97560a0e1922c6178cb0f3caca49e41/dMRI/5tt.sh#L84-L88
This is the result for NENAH002 w…
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Hi! It appears that there are many dMRI scans missing from the baseline, 2_year and 4_year datasets. The baseline and 2_year (~4k each). Would it be helpful to share a list of missing IDs with you via…
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The `Scan order` table in the QQC report checks the series order compared to the template dataset. This table is created by `qqc.qqc.dicom.check_order_of_series`.
You can try using the function by …
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Hello,
I am trying to run SDC through the web interface. Upon execution I am getting this error:
File "/home/exacloud/gscratch/IGNLab/qsiprep_test/DTIvenv/dtiplayg/lib/python3.11/site-packages/…
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### Authors
Oscar Esteban
### Summary
The NiPreps Community participated as a sponsor of the BrainHack, and seven projects had been proposed ahead the hackathon: “dMRI-NiPreps,” “Post-fMRIPrep ICA-…
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### Title
dMRI QC: implementation and automation
### Leaders
Dr. Thomas Close
Dr. Mahdieh Dashtbani Moghari
### Collaborators
Dr. Thomas Close
### Brainhack Global 2022 Event
Brainhack Austral…
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**Instructions from Kenataro**
How to transform JHU parcellation map
Start 「DiffeoMap」
Open the “byte format” templates of FA image and the trace image.
Open the subject of FA image a…
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**When attempting to install dMRI-AMICO in Ubuntu I get an error:**
tz@ALPINE:/mnt/e$ pip install dmri-amico
Defaulting to user installation because normal site-packages is not writeable
Collecti…
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- to unroll 4D data over the 4th dim,
- optional input of ROI set or mask
- option to cluster the rows (spatial/voxel-wise) and/or columns (time or gradients),
- as well as select specific rows a…
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Hello,
I am currently in the process of running the Template Creation Step for the dMRI Harmonization Pipeline. As part of the preparation, I executed ./pipeline_test.sh to verify that the template…