-
From UDD. @tillea made a script that pulls all the EDAM annotations from there.
Please contact the debian-med mailing list or @tillea if help needed.
-
We have Data::Format associations from the Paris Biohackathon; let's use these to revise the is_format_of annotations in EDAM.
-
low priority but easy to do
annotate elements of the schema using edam:
https://www.ebi.ac.uk/ols/ontologies/edam
-
For the bio-tools subdomain we would like to restrict available (EDAM) terms that relate to our specific domain. Ideally we would like to specify a list of classes that can be chosen (for operations, …
-
- [ ] Data & format annotations:
Either from https://test.galaxyproject.org or https://usegalaxy.eu (_..org_ released with datatypes update every 4 months; _..eu_ has a few more tools than _..org_).
…
-
We need to change ontology so that mere synonyms are listed not as separated properties, but as (I would suggest) obo:hasExactSynonym annotations of canonical relations. The obo synonym annotation pro…
-
I just started to explore the qiime2 Galaxy tools. Obviously starting with the import tool I noticed that often the unspecific `format="data"` is used, e.g.
https://github.com/qiime2/galaxy-tools/b…
-
In the jupyter-notebook:
[FX] Question: should we use free text queries? Free text tend to return too many results.
-
[//]: # (You can add comment regarding your issue hereafter)
[//]: # (End of issue comments)
Hereafter are the proposed values for the attributes of the new term
| key | value |
| --- | --- |
…
-
http://pubdictionaries.org
http://new.pubdictionaries.org
And if they support updating, we could even think about making its update part of the release.