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There is already a free text version of the citation on publication pages. It would be nice if there was also a bibtex version.
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https://avivator.gehlenborglab.org/?image_url=https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001237.zarr
make a converter from fits too
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Figure out whether a CistromeDB-affiliated s3 bucket would be a better place to store the processed files (rather than a GehlenborgLab-affiliated one).
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Hey everyone. I'm trying to change tile size of OME-TIFF image using bfconvert using following command:
`./bftools3/bfconvert -bigtiff -tilex 4096 -tiley 4096 -option BF_MAX_MEM 64g in.ome.tiff out.o…
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We'll need to store more data than fits comfortably on EBS. Options:
- EFS: but it's [expensive](https://aws.amazon.com/efs/pricing/): $0.30/GB-month. In their defense, it looks like they mirror betw…
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_Commit_:
#### Steps to reproduce
1.docker run --detach --publish 8888:80 --volume ~/hg-data:/data \--volume ~/hg-tmp:/tmp --name higlass-container gehlenborglab/higlass:v0.2.57
2. toggle positi…
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The multiplexed MIF workflow requires actively moving back and forth between raw image and phenotype plots to choose optimal phenotype thresholds and check that phenotypes match the pathologist's expe…
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Thanks for creating this. I am trying to build the image and run it.
`python test.py` works well so I build the image with `docker build -t igvtest3 ./context` and it builds fine.
Then I try to…
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**User story**
I would like to be able to load a Zarr pyramid into Aviator, which has top levels in it that are smaller than the tile size on the lower levels. Doing so results in the image having a …
s-n-i updated
2 years ago
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From @nservant's comment in the cooler repo:
https://github.com/mirnylab/cooler/issues/90#issuecomment-337936279
> Thanks. It make sense.
One more comment, would you plan to generate a singular…