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Hello!
I have been using TOGA lately for transferring hg38 gene annotations to a newly constructed genome and it looks good so far! However, I do notice that annotations for non-coding RNAs such as…
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You can focus on the CDS annotations or gene, since they are the most common ones.
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We want to be able to include some standard basic statistics on the gene/protein annotation set for an assembly in a genome note. This sub workflow should accept an annotation set and calculate some s…
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* **PTHR ID & PTN node:**
GO:0000030 | mannosyltransferase activity | IBA with S000000557 , PTN002003922 | contributes_to | GO_REF:0000033
* **Sequences with problematic annotation (ID + gene/pr…
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1. [x] Migrate the total annotations graph from old stats to new stats - "Cumulative annotations by type and year"
2. [x] Remove genes and annotations per paper from old stats - "Annotations/genes fo…
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- gene-disease annotations should be only for terms defined by the gene causing the disease (e.g ~type1; ...)
- these annotations should come from OMIM only
- the annotation should be brought in ONL…
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The following axioms should be created/updated from OMIM:
'has material basis in germline mutation in' some GENE
- gene-to-disease information from OMIM, based on rules discussed HERE (need to be…
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We we have an ‘annotation’ in the ‘domain section’ of the gene page which displays the number of transmembrane domains.
This information is from a qualifier in the contig files.
As you can see i…
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In annotations (gff3) files, what should we do about genes missing the Note attribute? The InterMine build process expects this attribute to exist.
Workaround for experimental ViciaMine: I added ";…
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Hi there,
I was browsing around the zoonomia data portal and found this [link](https://cgl.gi.ucsc.edu/data/cactus/241-mammalian-2020v2-hub/documentation/zoonomiaGenes.html) saying that gene predic…