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GoaT has been joined by [BoaT](boat.genomehubs.org) and soon other Genomehubs sites. They all run off the same API so it would be great to make goat-cli code flexible enough to cope with these other s…
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When I run the following command to import Ensembl databases, it occurs error like this:
Command:
```
docker run --rm \
--name genomehubs-ensembl \
--network genomehubs-…
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problem like this:
cp: cannot stat '/genomehubs/Phytozome/PhytozomeV12_unrestricted/Ptrichocarpa/v3.0/annotation/Ptrichocarpa_210_v3.0.gene.gff3.gz': No such file or directory
ERROR: could not cp /g…
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@rjchallis @sujaikumar @ccaio Would be nice to get some ideas of what `goat-cli taxon/assembly(?)` should have in terms of the report endpoint for the API. The only thing implemented currently is `goa…
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```
# TODO: create an additional endpoint to describe available values and valid operators
```
https://github.com/genomehubs/genomehubs/blob/3f2d5a13259f79b9e334099098c7caf01109a035/src/genomeh…
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Hello!
When running `goat-cli taxon search` with a file as input I get an error for each query species which does not exist in goat. For species that do return a hit, the output is as expected. The…
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@rjchallis
I'm trying to implement scatter, with a CLI API:
```bash
goat-cli taxon scatter -x assembly_span -y gc_percent -t Eukaryota -u
```
All good. Returns what I think it the …
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First of all, let me say thank you for sharing the great project!
But I'm having a hard time importing a new genome.
I found my gff needs to be modified before the import.
So I added some lines i…
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The demo script seems to run through correctly for all steps up to 9, which just sits at a loading screen and gives this error "This site can’t be reached" when trying to access it in browser.
…
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https://goat.genomehubs.org/api/v2/report?result=taxon&includeEstimates=false&taxonomy=ncbi&report=table&rank=species&x=tax_tree%28Orobanchaceae%29%20AND%20assembly_span&cat=assembly_span%5B10%5D
H…