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Hello!
Thank you very much for your contributions and your publicly available data!
I have a question regarding the 11 genomes mentioned in your article. Could you kindly let me know if it is po…
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Hi Amrviz Team,
I recently installed your pipeline on my HPC, which has a substantial number of CPUs. The installation went smoothly, and I successfully ran and visualized the output using your sampl…
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Hi Rory,
I am simulating SARS-CoV-2 diluted in a bacterial environment. My configuration file looks as follows :
```
output_path = "$SIM_DIR/pod5_files"
target_yield = $TARGET_YIELD
pore_type =…
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Notes:
Reverse index
First step: sketch between those which share a bin
Can give assembly quality as input and presort, top will always be best (to find representative to align against)
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Hello dear developers,
I have run PECAT on a diploid plant genome (heterozygosity=3.3) and obtained a primary (4.7Gb) and alternate (2.6Gb) set and haplotype1 (4.7Gb) and haplotype2 (2.8Gb). Do yo…
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Hi,
After running EG with v4.2.4 for a while without major problems, we upgraded to 4.4.0 recently and have a couple issues.
It seems one issue is with TEstrainer where run time explodes into we…
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Hello developers,
Thank you for developing a nice benchmarking tool. How to generate reference genomes in json format for BinBencher assessment? I couldn't understand from the documentation…
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thanks for udpating the gnomAD-converter to support the gnomAD v4 data.
It would be nice to also support the gnomAD joint v4.1 VCF dataset, which has a little different in the INFO column.
In the jo…
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I think it would be great if the download of the genomes by magnet is moved to a common location like /tmp where genome once downloaded is reused and only genomes which are absent in tmp are downloade…
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Hi, will support for non-human genomes be added? Thanks!