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Now GMQL engine provides in output dataset schema file also type INTEGER for region attributes (see issue GMQL issue #93 [https://github.com/DEIB-GECO/GMQL/issues/93](url))
Yet, in Schema section of …
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https://github.com/LiNk-NY/curatedTCGAManu/blob/6aa1c1f6b84341e20ad0035238e7b5ac6f78039a/vignettes/GMQL_vignette.Rmd#L86
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Enable the use of signal data sample (e.g. BigWig) in some operands, e.g., as second operand of MAP (or in COVER, to be discussed).
Possibly/probably a specific "special" versio,n of the defined MAP …
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During data upload check sample consistency vs. dataset schema; complete loading only if all lines of all samples of the uploaded dataset are compliant, whereas stop upload at the first line not compl…
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Enable the user to change the name of his/her datasets
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COVER / SUMMIT / FLAT / HISTOGRAM
JaccardIntersect_global and JaccarResult_global indexes should be included in metadata, calculated as JaccardIntersect and JaccarResult but on all sample regions
o …
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Add command to automatically create “annotation regions”, i.e. regions of a given length starting from a certain location (including also the left-end of the leftmost region in a sample/dataset) and/o…
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Implement on ranges objects.
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Some relevant literature from database theory:
[GenAp](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0904-1) a distributed SQL for geno…
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Please consider this query:
```
DATA_SET_VAR = SELECT(provider == "Campaner") HG19_BED_ANNOTATION;
MATERIALIZE DATA_SET_VAR into test_select;
```
It returns two samples.
Btw, no sample wi…
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I highly doubt we care about this, but I provide a workaround anyway, as FontForge works almost perfectly in Wine otherwise. (Discovered while debugging #5016.)
After many attempts, I ran FontForge…