-
Realizovati kolo koje određuje *Heming*ovu distancu između ulaznih 8-bitnih kodnih riječi `a` i `b`. Izračunata vrijednost se dobija na 4-bitnom izlazu `y`. Hemingova distanca predstavlja broj bitskih…
-
Compute the distance for all pairs of sequences once the grep of the constant part of the barcode is done. Plotting the distances of pairs allows to evaluate the correct threshold for collapsing. This…
-
I think we are getting alot of noise in UMI misreads.
Just doing the numbers: if we use 1pM of library with about 1M compounds in it, assuming its all equally distributed (it is not but whatever) w…
-
I had a question regarding the argument order in the `normalized_hamming_distance` calculation within the compute_metrics function. Currently, the code uses:
https://github.com/superkaiba/causal-llm-…
-
### Description of the question
I am confused about what the numbers mean in the clone_id naming. Based off the "Clonotype definition criterion", I understand what each position corresponds to, but w…
-
Hi,
I am trying to run CRISPR-Correct with just one fastq file (R1 only). According to the readme it should be possible to do so.
How should I define the fastq_r2_fn parameter as it seems to be re…
Edert updated
19 hours ago
-
**Memgraph version**
2.20.1
**Describe the bug**
```
:workload {:hacreate {:empty-failed-show-instances? true,
:n1-jaccard-consistency 1.0,
:empt…
-
Alot of what I see online suggests that a hard coded (no INDEL) regex is pretty common for DEL calling. Maybe we should add this as an option.
All the infrastructure is there with the CallModes enu…
-
### Describe the bug
When changing the metric used my usearch the index size shrinks resulting in the index dimensions now being 0. I tried doing some digging to find a solution and or an example in …
-
if self.semi_conv:
if self.comp_feat_upsample:
if self.use_high_pass:
mask_hr_hr_feat = self.content_encoder2(compressed_hr_feat)
…