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Application: HCP Pipelines, most recent stable version
Link:
Cluster: Myriad
Description: The HCP Pipelines product is a set of tools (primarily, but not exclusively, shell scripts…
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### What happened?
I'm using fMRIPrep to process HCP-YA data, which includes single band reference (SBRef) images. However, I've noticed that the SBRef images were not utilized during the motion co…
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## Open Questions
### Modelling/Dimensionality Reduction
- [ ] Decide how will we want to deal with 3D data (vectorized, 2D, or 3D matrices)
- [ ] Determine network capacity (N layers; size; ty…
gkiar updated
5 years ago
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Discussed w/ @jbpoline:
![image](https://cdn-images-1.medium.com/max/1600/1*44eDEuZBEsmG_TCAKRI3Kw@2x.png)
- **Think whether we can incorporate constraints in the autoencoder based on the "usual"…
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Currently, the pipeline will operate within the volumetric sphere. The interface for MRI data is largely volumetric. I will add options to recognize CIFTIs and integrate within the pipeline.
This …
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gkiar updated
5 years ago
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Hello. We are running HCPpipeline `docker://bids/hcppipelines:v4.1.3-1`. When we feed t1w and t2w input file, we run into the following error message.
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Fri Feb 18 18:17:36 EST 2022:T2wToT1wReg.…
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@glasserm @gcburgess What do you think about us adding 'zstat' explicitly as part of the summary (merged) file names that result from the task pipeline, so that we no longer have this confusing histo…
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Hi Emma,
I'm so confused why and how to determine the refdata (--refdata=*.func.gii)?
Different refdata could lead to different results or it is just a reference of coordinates and space?
J…
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From the docs:
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In versions 0.13 and later, QSIPrep finds the “most representative” b=0 images per warped group.
A nearly identical approach is used in the developmental HCP pipelines, where …