-
Change to Me3
https://www.pombase.org/reference/PMID:22683269
-
Hello Vadim and Team,
I am using a spectral library for modified histone peptides that I built in skyline. I have some questions regarding using this library...
1. What is the best way to conver…
-
/api/v1/hg38/histone_modifications?chrom=chr1&start=1&end=100000&location=overlapping
vs.
/api/v1/test/histone_modifications?chrom=chr1&start=1&end=100000&location=overlapping
-
Hi, fantastic work! But I have a question about the input of the model.
In your paper, you said `The input to scChromHMM is the set of interpolated histone modifications in single cells, as described…
-
Hello,
With the capabilities in the new version, I am interested in using DIA-NN to search for histone PTMs from extracted histones. The since histone tails are highly decorated with PTMs, the main…
-
1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
-
Hello @akundaje and @leepc12 ,
I wanted to use this pipeline to analyze ultra-low-input, native ChIP-Seq samples [ULI-NChIP](https://www.nature.com/articles/ncomms7033) looking at histone modifica…
-
Hi, please can you tell me if S3norm is suitable to be applied to many samples containing very different histone/chromatin modifications (including both activating and repressing, e.g. H3AcK27 and H3M…
rlh60 updated
2 years ago
-
Hi,
Histone modification BPs will be moved to MFs in the BP refactoring project.
Annotations are here:
https://docs.google.com/spreadsheets/d/1LJTu3sZjwH7u3sD65KXf_e-l3A85cRKpeiYh2DVsRgg/edi…
-
Hi @kimrutherford,
One thing that would be nice is to give some warnings for alleles and modifications where we know that the sequence is wrong, so that people know it when they see it in the websi…