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I aligned 38 sequences, average length 72, but including one outlier sequence with a length of 505 and C-terminal homology.
Same thing happens with muscle or belvu. Alignment is long , but I expe…
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Hidden Markov Models are quite common in time series analysis. Since they involve discrete variables, HMC is not always appropriate, although we can still apply HMC for continuous parameters of an HMM…
yebai updated
1 month ago
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Hi,
Reading of models built from DNA sequences appears to fail: below I show an example using a motif from the Dfam database ([DF0000029](http://dfam.org/entry/DF0000029)).
```
cp = hmm.HMM.cre…
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https://en.wikipedia.org/wiki/Baum–Welch_algorithm
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我的cppjieba.py
```
#encoding=utf-8
from ctypes import *
import os
cur_dir = os.path.dirname( os.path.abspath(__file__)) or os.getcwd()
lib = cdll.LoadLibrary(cur_dir+'/libJieba.so')
lib.Jieba_…
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Hello, I'm trying to train a HMM model from a 15 minute wav file. It crashes with following traceback:
```
Traceback (most recent call last):
File "trainer.py", line 20, in
aS.trainHMM_fr…
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LLVM cannot vectorize and optimize the following case. LLVM cannot generate SIMD instructions for vectorization optimization in this case.why?
```
#include
struct plan7_s {
int M; …
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**Describe the bug**
A clear and concise description of what the bug is.
i was to rerun the HMM code by use own xtc and tpr files, but it report the error as follow:
![image](https://user-images.…