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LDtrait(
snps=snps,
pop = "ALL",
r2d = "r2",
r2d_threshold = 0.1,
win_size = 5e+05,
token = "my token",
file = FALSE,
genome_build = "grch37",
api_root = "…
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Hi
I am using LDmatrix in a R script after saving it in .Renviron
The script is using LDmatrix in a loop for each chromosome and now it is few days that it is very slow and I got the timeout messag…
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Senf to `LDlinkR` maintainer email address from user ZEY, with minor edits:
I am contacting you in regards to your recently published R package LDlinkR.
......
However, I’d like to bring to your…
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Hi,
Is the API server down? I get the following issue from using LDProxy():
```
Error in curl::curl_fetch_memory(url, handle = handle) :
SSL peer certificate or SSH remote key was not OK: [l…
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Hi,
Thanks for your effort in construct it, in my mind it integrated more useful database than earlier tool, I want to use it. But I don't know how to query several variants at once time since the…
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I did notice the other recent issue with the `link_recomb` function, but that seems to be separate to the issue I have encountered.
Essentially after running the following:
```
analysis_locus =…
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Not sure if this is the appropriate forum for this but recently I started getting certificate errors when trying to interact with the LDLink api
Someone else reported this specific to the R api but…
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Hi,
As I understand from the documentation, currently only 50 SNPs can be queried in a single API request. I have a list of ~15K independent SNPs identified from ~1800 GWASs and I would like to use…
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Hello,
Is there a way to find proxies in an automated way using manually imported exposure data files, the same way it finds proxies using the extract_instruments function?
thanks in advance
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First, let me thank you for such a fantastic R package. The "LDproxy_batch" function returns an empty object. I requested a API token, which worked with the LDproxy function. I followed the examples …