-
Hi jannatjiaz,
I am so interested in your ChromoDethripsis methods. I am curious about one issue:
python CTResolveLowDensity.py
--chromosome
--bam
--readnames
--haplotype1_reads
--hapl…
-
### Prerequisite
We are looking forward to having you on our team. Please make sure to attend the general Hack for LA onboarding to get the process started https://meetup.com/hackforla/events.
###…
-
**Project description**
TBSM is a lightweight console desktop manager written in bash that supports wayland out-of-the-box.
**Metadata**
* homepage URL: https://loh-tar.github.io/tbsm/
* sourc…
-
I'm trying to estimate LOH in cnvkit using purity, ploidy estimates from sequenza.
I use cnvkit call option with its default thresholds,
conda activate **cnvkit0.9.7**
cnvkit.py call …
-
ebatb ti krutoy
-
Hello!
I am running numbat on 36 lung tumor cryo visium reactions. My normal reference is a at tumor-adjacent "normal" visium reaction that has been confirmed to be tumor-free by a pathologist. My…
-
Hi, thank you for developing this tool. But I have come across the following issue.
What I've run:
```
python ${WAKHAN}/src/main.py \
--threads ${THREADS} \
--reference ${FASTA} \
--target-bam…
-
Hi
I run FACETS and get the results:
```
chrom seg num.mark nhet cnlr.median mafR segclust cnlr.median.clust mafR.clust start end cf.em tcn.em lcn.em
1 1 479 79 0.0965351900685901 0.04037…
-
Old internal issue:
https://jira.gsc.wustl.edu/browse/CI-77
-
When `TP53_loh` is inferred, the api still responds with 0
```bash
$ curl \
-X POST \
-H "Content-Type: application/json" \
-d '{"HB": 10, "PLT": 100, "BM_BLAST": 5, "CYTO_IPSSR": "In…