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When scraping fairly large websites, we hit the token limit and receive the `GGML_ASSERT` error:
```
n_tokens_all
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- PyMol; A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences; https://www.pymol.org/
![pymol](https://cloud.githubusercontent.com/asset…
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This class includes (surprisingly, IMO) protein complexes. How would you go about describing the 'sequence' of a complex? You wouldn't. You'd instead describe the sequence(s) of it's components. I see…
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_From @dosumis on November 8, 2016 16:49_
_From @dosumis on October 28, 2015 13:46_
_From @dosumis on August 28, 2015 9:56_
We currently have patterns like this:
- molecular_function that ('has par…
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The names of these make it unclear which type of entity each is meant to refer to. Based on child terms of the latter, I'm guessing that it refers to the actual molecules and the former refers to the …
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I went down a rabbit hole and want to pin this idea in case someone wants to take it up later: optimal fuzzy matches between the gsheet and CCV databases (or potentially any other database formats we …
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Biolink Model 3.0 introduced a new 'qualifier' framework for knowledge representation and TRAPI query. This new framework will require additional KP test edge information for testing, thus, a new KP t…
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This thread collects declaration of participation to the [Ten Years Reproducibility Challenge](https://rescience.github.io/ten-years/). You can add your own declaration by adding the article your targ…
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It could be useful to support simulations with explicit space group symmetry, along the lines of http://pubs.acs.org/doi/abs/10.1021/ct100506d. I think this could be done with just another type of vi…