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In this issue, I detail the work done:
- to get MS lesion segmentation using the current best model.
- to manually correct those lesion segmentations
I created the file `monai/run_inference.py` …
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Opening this issue thanks to a comment from @leelisae regarding some missing lesion mask at M0.
Related issue #96
On it now with the following config file:
```yaml
FILES_LESION:
- sub-edm1…
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@leelisae while working on #91 I was wondering, after you run the processing on a subject and you do the QC, if you notice issues with the segmentation, where is the manually corrected segmentation or…
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# Description
I would like to push a new dataset `head-neck-tumor-challenge-2024` to git-annex.
This is a public dataset (https://zenodo.org/records/11199559) , contains 150 subjects on 2 timepo…
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I noticed that the link provided for the segmentation labels in the training dataset's sanity check section is broken. Specifically, the following text in the README mentions a "download" link which a…
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**Is your feature request related to a problem? Please describe.**
We are working on a project where the interpretation of a pathological finding depends on the context of multiple MRI sequences. Spe…
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from @abrasax
There is a successfull experience with manual segmentation of the texts using hashmarks.
It could be used for chinese texts and others.
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The program keeps crashing due to a segmentation fault. It was previously crashing due to the rendered issue described in #1061, however I began to set `GSK_RENDERER=gl` whenever I opened the app and …
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# Description
I would like to push a new dataset `ucsf-gm-psir` to git-annex server.
Is a dataset shared by our UCSF collaborators, contains 110 subjects with:
`anat`: axial PSIR images from…
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### Your current environment
When running gemma2 7b, an error is reported [rank0]: RuntimeError: CUDA error: CUBLAS_STATUS_EXECUTION_FAILED when calling `cublasGemmEx( handle, opa, opb, m, n, k, &fal…