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Here I want to:
- [x] Explore the different tables from the extract to identify which ones contain the relevant data
- [x] Match `concept` table to OMOP tables that contain the relevant microbiol…
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Extract data from the example OMOP data to fill the [inpatient_microbiology](https://ramses-antibiotics.web.app/reference/inpatient_microbiology.html) table from the validate article. This is a split …
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The Parkinson’s disease drug entacaponedisrupts gut microbiome homoeostasis viairon sequestration – Fátima C. Pereira – Nature Microbiology
https://www.nature.com/articles/s41564-024-01853-0.epdf?sha…
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Insights into the gut microbiome of vitiligo patients from India – Sudhir Kumar – BMC Microbiology
https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-024-03529-5
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## CDM or THEMIS convention?
THEMIS
## Table or Field level?
Table
## Is this a general convention?
Applies to multiple fields
## Summary of issues
Below is taken from a real EHR data (P…
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Changes in the nasopharyngeal and oropharyngeal microbiota in pediatric obstructive sleep apnea before and after surgery: a prospective study – Lucheng Fang – BMC Microbiology
https://bmcmicrobiol.bi…
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## Department of Microbiology, National University of Athens
**GRSciColl URL**: https://www.gbif.org/grscicoll/institution/63a385f4-8615-405f-82b5-49e34b1ef2ab
**Code**: `NUA`
**Fuzzy name search in G…
spalp updated
1 month ago
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1. **Lab Name**: Neurophysiology Virtual Lab
2. **List of Experiments and Repositories**:
a. Voltage Clamp Technique
https://virtual-labs.github.io/exp-voltage-clamp-au
v1.0.0
b. Simple …
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In this case the noisy footers are wrongly captured in the DAs.
```xml
DATA AVAILABILITY
The genome assembly was uploaded to NCBI Genba…
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over years many users create courses in different categories (eg 2020, 2021, ....) with same names (biology...)
it makes it hard to opt out of archiving if they only see a list of same named courses.…