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It is a common use case in microscopy to have the camera acquire a stack of images of a finite number, and have the camera's "clock" be driving the rest of the system via GPIO (source: Ivan). As this…
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The spectral vector denoising algorithm is described in
- Rebecca C. Harman, Ryan T. Lang, Eric M. Kercher, Paige Leven, and Bryan Q. Spring. **Denoising multiplexed microscopy images in n-dimensio…
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Use the wordcloud python library to generate a word cloud from this (source: Modified from I2K Program):
```
BioImage-Analysis Code Generation
Introduction to CellProfiler: A beginner’s guide to …
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Hi,
Thanks for the project
Is it possible to realtime-stitch for brightfield microscopy images 2D ?
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**Disclaimer**
This issue is based on preliminary observations and does not contain a lot of details/examples at the moment.
## Issue description
I started recently to train microscopy models i…
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Is it possible to incorporate extra functionality to microscopy nodes so that it can render 4D N,H,W,C z-stack ('zxyc') as a single appropriately colored mesh / volume rather than loading the channels…
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## Question:
Create a synthetic dataset of measurements of cells from microscopy images (intensity, aspect ratio, perimeter, elongation) as pandas dataframe. Then, determine a UMAP from these param…
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**Disclaimer**
This issue is based on preliminary observations and does not contain a lot of details/examples at the moment.
## Issue description
I noticed that the segmentation time on large m…
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Thank you for releasing the code and congratulations on the ECCV acceptance.
I am trying to run the code using the ER dataset. However, the `fractal_analysis.py` file is giving me an error `RankWar…
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Initially we are using a ridge detection method to analyze the actin filament networks in cell images, but it has come to my attention that there is a field in actin fialments which uses Stretching Op…