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Hello, MotIf is a great job! May I ask, are you using the A100 with 80GB or 40GB of memory? Can it be understood that the training requires 10,000 negative samples? How long does the training take?
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Hello!
I'm using modkit for a bacterial (epi)genomics project. I have a large, GC-rich bacterial genome with several methyltransferases which may or may not be expressed under culture conditions. …
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Hello, after running the experiment I found that the accuracy is very low, I have put the experiment parameters as well as the results below, can you see what the problem is?
train.sh is
> export …
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CP072753.1 RepeatMasker similarity 1 77 2.7 + . Target "Motif:(AACCCT)n" 1 76
CP072753.1 RepeatMasker similarity 4121 4244 0.0 + .…
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Hi Art,
I was wondering if I could concatenate all my pileups and pass there resulting bed file to `find-motifs`? My logic here is that my samples have different coverage and by concatenating I am …
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When I created a incident on the "Motifs d'échec" adminstration page, I get an error 500 if the code is already used.
To reproduce
Go to "Motifs d'échec"
Click on create a new "Motifs d'échec"
Type …
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Now I am analyzing the footprints of some TFs, however, I got the error of 'Error in stop_if_wrong_length("'seqnames'", ans_len) :
'seqnames' must have the length of the object to construct (1) or…
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Hello,
I wanted to report this error when running `motif discovery`.
```
Traceback (most recent call last):
File "/Accounts/gkanaan/miniconda3/nanomotif/bin/nanomotif", line 8, in
sys.…
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Thank you for developing this fantastic tool for visualizing HOMER results! I truly appreciate your efforts in making data visualization more accessible.
I have a question about using the heatmap f…