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## Expected Behavior
I expect using `colabfold_search` with locally prepared DBs to give the same MSA results as those using `colabfold_batch` with the MSA server.
## Current Behavior
The two…
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PIO1_4 (IO13) is missing in the MSA ETS application
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Thank you so much again for making this resource available!
This is basically a duplicate of #646 but updated since the issues are much more intermittent.
## Expected Behavior
Consistently re…
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Use [Nightingale](https://ebi-webcomponents.github.io/nightingale/?path=/story/components-tracks-interpro-track-readme--page) to start.
Other possibilities for libraries if we run into issues with …
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The MSAs that got generated for my predictions only contain a couple of sequences.
Is this due to limitations of the MMSeq2 sever or can this be adjusted?
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Hello, I'd like to reproduce the model's performance while generating MSAs locally.
I've got `colabfold_search` and `mmseqs2` as the search tools, and `uniref30_2302` and `colabfold_envdb_202108` a…
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Hello, thank you for such great work!
I’m interested in testing your model with additional MSA results.
Could you explain why the MSA pairing dataset was changed from `uniprot` to `uniref100`?
…
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Dear Jeremy,
First of all please accept my gratitude for your fine work. In terms of the issue, I went ahead and installed Boltz-1 in a fresh virtual environment with conda. I then tried to model an…
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# Background
The JnJ team requested using [Mafft](https://mafft.cbrc.jp/alignment/server/index.html) for DNA/RNA sequence alignment.
# Scope of work
* Implement running MSA via Mafft
* Add UI to…
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In the paper, the authors explain that during the "Search for relevant experimental datasets" phase, they selected two proteins from ProteinGym that are most similar to the target protein. For the thi…