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I have a naive question about your MSA methodology. Why would the aligner choose to align short segments (1000bp) before aligning again? Perhaps I am misunderstanding the parameters to abPOA.
E…
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관리 시스템, 포인트 수집 시스템 등을 구분하여 별개의 어플리케이션으로 분리해보세요.
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Thank you for developing such a great program! I've been using ppanggolin msa and it's been helpful. Here is the command I've been working with:
ppanggolin msa -p Pangenome_graph/pangenome.h5 --p…
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I have monomer MSAs generated for each sequence in a complex, how might I combine them to be used in a multimer structure prediction? I saw https://github.com/sokrypton/ColabFold/issues/601 discusses …
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Hello,
After executing the command colabfold_batch exper/fasta-res/G0_G0.fasta exper/pdbs --num-models 5, I encountered the following errors:
```
2024-05-06 15:47:16,903 Unable to initialize back…
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Running result2msa as described in the docs
`mmseqs result2msa DB DB DB_clu DB_clu_msa`
using older versions of mmseqs2 (in e.g 2019) previously merged results to give one '`DB_clu_msa`' file …
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## Expected Behavior
Rather than outputting the MSA files I get a segmentation fault.
## Current Behavior
I get a segmentation fault when I add the `--allow-deletion` flag. Works when I don't use…
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Hi BoWen, i am using alphaflow train.py to trying run, but find error with below:
AttributeError: 'AlphaFoldWrapper' object has no attribute 'extra_msa_stack
and i am using:
python trai…
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I often get an MSA output where at least one sequence is 1bp longer then the other sequences in the alignment. Other software expect an alignment of equal length. Can this bug be fixed?
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Contract Name: AWS Contract.
Key Term: Name Suspension.
Legalgraph's Answer: Section 4.1 >> Incorrect
Correct Answer: Yes
Citation 1 By LegalGraph: Page 3 >> Correct
Citation 2 By LegalGraph: Pa…