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@cesarcaballerogaudes @eurunuela @idevicente have any of you tried applying phase regression to multi-echo data? Asking you three because of your connections to https://github.com/idevicente/Phase-bas…
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I was thinking that multi-echo data could be leveraged in fMRIPost-rapidtide by ingressing outputs from [fMRIPost-tedana](https://github.com/ME-ICA/fmripost-tedana) (once it's up and running). Since t…
tsalo updated
1 month ago
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### What happened?
I ran fmriprep on multi echo data, but the outputs did not create any of the multi echo files
Input BIDS:
![image](https://github.com/user-attachments/assets/129a179c-9afb-4f…
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### Summary
In the past we supported running PCA+ICA on spatially concatenated multi-echo data. We ended up dropping the associated argument (`--sourceTEs`) because (1) it wouldn't work with MA-PCA…
tsalo updated
3 weeks ago
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As @cncastillo mention in a previous email: """... we are not currently handling the counters properly. I think I implemented this before Pulseq added counters LABELs as part of EXTENSIONS. It is a ve…
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- Dense Investigation of Variability of Affect (DIVA)
- https://openneuro.org/datasets/ds002278
- Multi-echo
- Effects of Phase Regression on High-Resolution Functional MRI of the Primary V…
tsalo updated
3 weeks ago
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## Current Behavior
Running `dune fmt` turns multi-line strings into normal strings.
Example from cram tests:
```
In multi-line strings, newlines are escaped, but their syntax is not preserved.
…
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WARNING: no messages received and simulated time is active. Is /clock being published
This is the message I receive when typing rostopic echo /multi_scan
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* [x] T2* map (space `boldref`?)
* [x] All echos, with STC+HMC+SDC applied (new flag)
* [ ] Decompositions
* [ ] _mixing.tsv separate from _desc-confounds_timeseries.tsv
* [ ] _metrics.tsv…
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Right now, the `monorepo-diff` plugin only makes it possible to perform a single step when matching a given `path`.
For instance, let's take the following snippet:
```yaml
# .buildkite/pipeline…