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Currently the `evaluate` method compares two local results to each another, which is useful. But as suggested by @marius10p, sometimes we want the evaluation to incorporate metadata from the "standard…
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http://neurofinder.codeneuro.org/
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What are the units for the list of `predictions` returned from `predict` function?
For context, I'm trying to apply some methods from Spikefinder to locate spikes in new datasets, and I'm using the…
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Trying to load the neurofinder regions using
```
import extraction as ex
model = ex.load(pathToRegions)
```
I get an error in the following line
```---> 23 regions = many([x['coordinates…
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There's been lots of discussion of the "ground truth" labels currently used for NeuroFinder, so we wanted to consolidate that discussion in one place, and get feedback on some new ideas for moving for…
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I am writing a survey paper on neuron detection techniques and suing Neurofinder as a benchmark. I just became aware that the leaderboard isn't loading anymore.
Is there any way I can access the lead…
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From a linux desktop and with centos OS, most of the time I will receive a connection error
![image](https://user-images.githubusercontent.com/7879758/44935194-bd93f200-ad3d-11e8-8305-b18b554314c2.p…
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I was trying to run the example described in the setup instructions:
CUDA_VISIBLE_DEVICES="0" python unet2ds_nf.py evaluate neurofinder.00.00 --model unet2ds_model.hdf5
The error is as follows:
…
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Let's discuss evaluation metrics for `spikefinder`!
The data for doing evaluation will be, for each neuron, a fluorescence trace and an estimated spike rate. Presumably the rate will be either binar…
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I posted a similar question on the [gitter channel](https://gitter.im/codeneuro/spikefinder) and @PTRRupprecht offered some tips (thanks!). Perhaps this is a better place to serialize the discussion i…