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I am trying to migrate some large datasets to nrrd and indeed pynrrd, and one thing I desire is to have `nrrd.read_data` support `np.memmap`. All my data is saved `raw` without compression, and say I …
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Hi,
Sorry that I posted AutoTract-related issue into the dtiplayground forum, but hopefully there might be someone who can help me with the problem.
When I am running AutoTract, the final result…
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This is a follow up feature request from the forum discussion: https://discourse.slicer.org/t/possible-new-slicer-extension-dicomtonrrdbatchprocessing/33284/2
Batch process a DICOM directory of pat…
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### code
import numpy as np
from cloudvolume import CloudVolume
from cloudvolume.lib import Bbox
import nrrd
print(dir(nrrd))
nrrd_…
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## Summary
The units of the values of NRRD header space direction is specified in the space units field. Otherwise, it is up to the software to interpret the values as mm, cms, or ums. This is a da…
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Currently, reading NRRD file doesn't pick the metadata related to segment names and colors that are saved in a slicer compatible NRRD segmentation. It would be a good idea to support this metadata by …
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compare http://teem.sourceforge.net/nrrd/format.html
https://pypi.org/project/pynrrd/
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Thanks for sharing this; it is the only Python project that I can find for converting DICOM to NRRD.
I am trying to convert some data being exported from Elekta Monaco TPS, and run into some issues…
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@matthew-brett - hans (@hjmjohnson) sent this email, and i think the best is to continue the discussion here.
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I have worked on the pynrrd project ( a pure python NRRD reader) to make it compatib…