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PRs #193 and #204 add visualizations for nucleus and gland detection datasets.
Currently these datasets are linked to investigations via pins, which works well, but I'm not sure if pins are the co…
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- [ ] użyć maksimum i sumy po kanałach jako podstawy segmentacji z MSO
- [ ] sprawdzić co lepiej: najpierw sum/maks na kolorach i potem MSO, czy najmpierw MSO na każdym kolorze, a potem jakoś połączy…
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In balloon example, the value of DETECTION_MIN_CONFIDENCE is 0.9, whereas in nucleus and coco examples the value of DETECTION_MIN_CONFIDENCE is set as 0. What is the use of it and how should its value…
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I used to use unet to do nucleus detection, but it can not address the overlap problem, so what is you result?
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I want only outline segmentation without using Keras, it is possible with only tobject detection in research/object detection ? because deeplab is image complete segmentation, in object detection we s…
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I just upgraded to Isaac Sim 2023.1.0 and therefore recloned the omnisaacgymenvs repo and reinstalled omniisaacgym through git as per the repo instructions. It does work but it has some strange/slow b…
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I am trying to run the nucleus detection model with the original data used in the paper.
I tried to used both resnet50 and coco weights, but they both show AP 0 for every IoU, and the detection is n…
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## patch-seq assay
Label: patch-seq assay
Alternative term(s): patch clamp and RNA sequencing assay
Definition: A single-cell RNA sequencing assay that takes a patch clamp recording from a cell a…
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I trying to train some DAPI nucleus images (22 images/masks with about 100 of objects labelled) with Startdist 3D using modified jupiter-notebook scripts examples(images folders). The masks have been …
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Hello,
Interesting work! I am trying to get this code setup locally, but I can't seem to find the file "class_mapping.txt" anywhere. Is there a script to generate the mapping? Am I missing something…