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Hi,
First, thank you for the recent work on mouse brains. I'm genuinely excited about and the potential to accelerate some of our work. I have one quick question (as of right now, anyway):
In th…
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Greetings,
I recently found this tool (thanks to a Neurostars answer by @gdevenyi) and have been testing it with a mouse model of neurodegeneration (ex-vivo imaging, 75 microns). I based things on …
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Hello,
Would it be possible to package FastSurfer completely for Pypi (and eventually conda-forge).
The main folder [FastSurferCNN](https://github.com/Deep-MI/FastSurfer/tree/stable/FastSurferCNN)…
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Original title is "Issue regarding to apply "DevCCF Velocity Flow Model" to other MRI data". It's out of focus. Therefore, I revised the title above (19 Jun, 2024):
Issue regarding to …
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Is there a way to translate the coordinates into the slice's number in QuickN11 ?
Thanks, appreciate it!
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This list should ideally cover all the orthogonal planes (anterior-posterior, dorsal-ventral, and medial-lateral) and ensure brain-wide coverage.
It is possible to distinguish between global and lo…
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I've been playing with it a little and seems to be really nice but I miss any implemented segmentation algorightms, there are lots of them like Random Cuts, Shape Diameter Function (the one used in CG…
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I was trying to test run the QUINT-workflow with Ilastik-segmentation of a confocal image and a brightfield image (of the same slice) registered in the WHSRat-v3-atlas.
The problem is that the brain …
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I am running `antsBrainExtraction.sh -a fast3_sd.nii.gz -m ambmc_thr_ds_bin_br.nii.gz -e ambmc_thr_ds.nii.gz -q -d 3 -s nii.gz -o new_ss_` with the files found [here](http://chymera.eu/debug/antsss.ta…