-
-
Hi, I want to use OrthoFinder to study orthology relationships for all genes in multiple species.
I don't clearly understand the one-to-one relationships. I think the number in OrthologuesStats_one-…
-
Dear Davide
When I use orthofinder, I come across a strange problem
Traceback (most recent call last):
File "orthofinder.py", line 7, in
File "scripts_of/__main__.py", line 1765, in main
F…
-
Hello,
I'm running into an error with v 2.5.5: "ERROR: Species tree inference failed / local variable 'speciesTree' referenced before assignment"
I think this might be a similar error to one pre…
emdtr updated
1 month ago
-
## Description
**Q: What is the name of the feature?**
A: Grounding Assist
**Q: What does this feature enable the user to do?**
A: Indirectly, disambiguate a name for a bioentity (e.g.…
-
When I use orthofinder to analyze 18 species, I always can't get the contents of Gene_tree、orthologues 、Species_Tree and MultipleSequenceAlignments four files. The command I use is as follows: orthof…
-
Excellent work published in Nature Communications! After reading your article, I have some questions regarding the projection of single-cell transcriptomics between species. eg:
![image](https://gith…
-
Hello,
I was wondering if there was an alignment file for the orthologues hidden within the results folder.
Also, is there a way to add the species name to each header of the orthologues fast…
-
OrthoFinder version 2.5.2
**Can anyone help with this?**
`Writing orthogroups to file
---------------------------
/tmp/_MEI6hTcHS/numpy/core/fromnumeric.py:3118: RuntimeWarning: Mean of empty …
-
Dear OrthoFinder team,
The manual states that using the `-og` option makes the program stop after inferring orthogroups, however, the observed behaviour is stopping only after having written sequen…